.. DO NOT EDIT. .. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY. .. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE: .. "auto_example/p2f/epid/plot_dyn_basics.py" .. LINE NUMBERS ARE GIVEN BELOW. .. only:: html .. note:: :class: sphx-glr-download-link-note :ref:`Go to the end ` to download the full example code. .. rst-class:: sphx-glr-example-title .. _sphx_glr_auto_example_p2f_epid_plot_dyn_basics.py: FMUPointToFieldFunction basics ============================== .. GENERATED FROM PYTHON SOURCE LINES 7-12 :class:`~otfmi.FMUPointToFieldFunction` wraps the FMU into an :py:class:`openturns.PointToFieldFunction` object. This kind of function accepts :py:class:`openturns.Point` or :py:class:`openturns.Sample` as inputs, and outputs a :py:class:`openturns.Sample` or a set of :py:class:`openturns.Field`. .. GENERATED FROM PYTHON SOURCE LINES 14-18 .. code-block:: Python import openturns as ot import otfmi.example.utility import openturns.viewer as viewer .. GENERATED FROM PYTHON SOURCE LINES 19-20 First, retrieve the path to *epid.fmu*. .. GENERATED FROM PYTHON SOURCE LINES 20-22 .. code-block:: Python path_fmu = otfmi.example.utility.get_path_fmu("epid") .. GENERATED FROM PYTHON SOURCE LINES 23-24 Wrap the FMU in an :py:class:`openturns.PointToFieldFunction` object: .. GENERATED FROM PYTHON SOURCE LINES 24-32 .. code-block:: Python function = otfmi.FMUPointToFieldFunction( path_fmu, inputs_fmu=["infection_rate"], outputs_fmu=["infected", "susceptible", "removed"], start_time=0.0, final_time=15.0, ) .. GENERATED FROM PYTHON SOURCE LINES 33-37 .. note:: The start and final times must define an interval comprising the mesh. Setting manually the start and final times is recommended to avoid uncontrolled simulation duration. .. GENERATED FROM PYTHON SOURCE LINES 39-41 Simulate the function on an input :py:class:`openturns.Point` yields an output as :py:class:`openturns.Sample`, corresponding to the output evolution over time .. GENERATED FROM PYTHON SOURCE LINES 41-44 .. code-block:: Python x = [2.0] y = function(x) .. GENERATED FROM PYTHON SOURCE LINES 45-46 Retrieve the simulation mesh .. GENERATED FROM PYTHON SOURCE LINES 46-48 .. code-block:: Python timeGrid = function.getOutputMesh().getVertices() .. GENERATED FROM PYTHON SOURCE LINES 49-50 Plot the data .. GENERATED FROM PYTHON SOURCE LINES 50-59 .. code-block:: Python graph = ot.Graph("Simulation data", "Simulation time (days)", "Number of individuals", True) graph.setLegendPosition("upper right") for i in range(function.getOutputDimension()): curve = ot.Curve(timeGrid, y[:, i]) graph.add(curve) graph.setLegends(function.getOutputDescription()) graph.setColors(["red", "blue", "green"]) view = viewer.View(graph) .. image-sg:: /auto_example/p2f/epid/images/sphx_glr_plot_dyn_basics_001.png :alt: Simulation data :srcset: /auto_example/p2f/epid/images/sphx_glr_plot_dyn_basics_001.png :class: sphx-glr-single-img .. GENERATED FROM PYTHON SOURCE LINES 60-62 Simulate the function on a input :py:class:`openturns.Sample` yields a set of fields called :py:class:`openturns.ProcessSample`: .. GENERATED FROM PYTHON SOURCE LINES 62-66 .. code-block:: Python X = [[2.0], [2.25], [2.5]] Y = function(X) print(Y) .. rst-class:: sphx-glr-script-out .. code-block:: none [field 0: [ t infected susceptible removed ] 0 : [ 0 1 762 0 ] 1 : [ 0.1 1.21451 761.785 0 ] 2 : [ 0.2 1.47439 761.526 0 ] 3 : [ 0.3 1.7891 761.211 0 ] 4 : [ 0.4 2.17242 760.828 0 ] 5 : [ 0.5 2.63661 760.363 0 ] 6 : [ 0.6 3.19841 759.802 0 ] 7 : [ 0.7 3.88223 759.118 0 ] 8 : [ 0.8 4.70961 758.29 0 ] 9 : [ 0.9 5.70999 757.29 0 ] 10 : [ 1 6.92615 756.074 0 ] 11 : [ 1.1 8.39548 754.605 0 ] 12 : [ 1.2 10.1689 752.831 0 ] 13 : [ 1.3 12.3201 750.68 0 ] 14 : [ 1.4 14.9124 748.088 0 ] 15 : [ 1.5 18.0315 744.968 0 ] 16 : [ 1.6 21.8003 741.2 0 ] 17 : [ 1.7 26.3212 736.679 0 ] 18 : [ 1.8 31.7312 731.269 0 ] 19 : [ 1.9 38.2239 724.776 0 ] 20 : [ 2 45.9507 717.049 0 ] 21 : [ 2.1 55.1104 707.89 0 ] 22 : [ 2.2 65.9762 697.024 0 ] 23 : [ 2.3 78.7347 684.265 0 ] 24 : [ 2.4 93.6218 669.378 0 ] 25 : [ 2.5 110.945 652.055 0 ] 26 : [ 2.6 130.845 632.155 0 ] 27 : [ 2.7 153.484 609.516 0 ] 28 : [ 2.8 179.044 583.956 0 ] 29 : [ 2.9 207.438 555.562 0 ] 30 : [ 3 238.543 524.457 0 ] 31 : [ 3.1 272.168 490.832 0 ] 32 : [ 3.2 307.821 455.179 0 ] 33 : [ 3.3 344.961 418.039 0 ] 34 : [ 3.4 382.941 380.059 0 ] 35 : [ 3.5 420.997 342.003 0 ] 36 : [ 3.6 458.399 304.601 0 ] 37 : [ 3.7 494.396 268.604 0 ] 38 : [ 3.8 528.423 234.577 0 ] 39 : [ 3.9 560.017 202.983 0 ] 40 : [ 4 588.776 174.224 0 ] 41 : [ 4.1 614.617 148.383 0 ] 42 : [ 4.2 637.514 125.486 0 ] 43 : [ 4.3 657.468 105.532 0 ] 44 : [ 4.4 674.734 88.2664 0 ] 45 : [ 4.5 689.531 73.4687 0 ] 46 : [ 4.6 702.048 60.9524 0 ] 47 : [ 4.7 712.612 50.3876 0 ] 48 : [ 4.8 721.476 41.5241 0 ] 49 : [ 4.9 728.835 34.165 0 ] 50 : [ 5 734.954 28.0463 0 ] 51 : [ 5.1 740.022 22.9776 0 ] 52 : [ 5.2 744.185 18.8147 0 ] 53 : [ 5.3 747.617 15.3834 0 ] 54 : [ 5.4 750.439 12.5615 0 ] 55 : [ 5.5 752.742 10.258 0 ] 56 : [ 5.6 754.631 8.36853 0 ] 57 : [ 5.7 756.179 6.82088 0 ] 58 : [ 5.8 757.438 5.5618 0 ] 59 : [ 5.9 758.468 4.53182 0 ] 60 : [ 6 759.31 3.69001 0 ] 61 : [ 6.1 759.994 3.00643 0 ] 62 : [ 6.2 760.552 2.44805 0 ] 63 : [ 6.3 761.008 1.99222 0 ] 64 : [ 6.4 761.378 1.62245 0 ] 65 : [ 6.5 761.679 1.32064 0 ] 66 : [ 6.6 761.926 1.07442 0 ] 67 : [ 6.7 762.125 0.87479 0 ] 68 : [ 6.8 762.288 0.71192 0 ] 69 : [ 6.9 762.421 0.579098 0 ] 70 : [ 7 762.529 0.471441 0 ] 71 : [ 7.1 762.616 0.383627 0 ] 72 : [ 7.2 762.688 0.312027 0 ] 73 : [ 7.3 762.746 0.254002 0 ] 74 : [ 7.4 762.793 0.206678 0 ] 75 : [ 7.5 762.832 0.168096 0 ] 76 : [ 7.6 762.863 0.136832 0 ] 77 : [ 7.7 762.889 0.111335 0 ] 78 : [ 7.8 762.909 0.090549 0 ] 79 : [ 7.9 762.926 0.0737061 0 ] 80 : [ 8 762.94 0.0599709 0 ] 81 : [ 8.1 762.951 0.0487739 0 ] 82 : [ 8.2 762.96 0.0397011 0 ] 83 : [ 8.3 762.968 0.0323025 0 ] 84 : [ 8.4 762.974 0.0262712 0 ] 85 : [ 8.5 762.979 0.0213842 0 ] 86 : [ 8.6 762.983 0.017399 0 ] 87 : [ 8.7 762.986 0.0141503 0 ] 88 : [ 8.8 762.988 0.011518 0 ] 89 : [ 8.9 762.991 0.00937145 0 ] 90 : [ 9 762.992 0.00762164 0 ] 91 : [ 9.1 762.994 0.00620381 0 ] 92 : [ 9.2 762.995 0.00504764 0 ] 93 : [ 9.3 762.996 0.00410515 0 ] 94 : [ 9.4 762.997 0.00334148 0 ] 95 : [ 9.5 762.997 0.00271874 0 ] 96 : [ 9.6 762.998 0.0022111 0 ] 97 : [ 9.7 762.998 0.00179978 0 ] 98 : [ 9.8 762.999 0.00146436 0 ] 99 : [ 9.9 762.999 0.00119093 0 ] 100 : [ 10 762.999 0.000969388 0 ] 101 : [ 10.1 762.999 0.000788726 0 ] 102 : [ 10.2 762.999 0.000641456 0 ] 103 : [ 10.3 762.999 0.000522127 0 ] 104 : [ 10.4 763 0.00042482 0 ] 105 : [ 10.5 763 0.000345498 0 ] 106 : [ 10.6 763 0.000281226 0 ] 107 : [ 10.7 763 0.000228815 0 ] 108 : [ 10.8 763 0.00018609 0 ] 109 : [ 10.9 763 0.000151472 0 ] 110 : [ 11 763 0.000123243 0 ] 111 : [ 11.1 763 0.000100231 0 ] 112 : [ 11.2 763 8.15853e-05 0 ] 113 : [ 11.3 763 6.63806e-05 0 ] 114 : [ 11.4 763 5.3986e-05 0 ] 115 : [ 11.5 763 4.39431e-05 0 ] 116 : [ 11.6 763 3.57536e-05 0 ] 117 : [ 11.7 763 2.90777e-05 0 ] 118 : [ 11.8 763 2.36684e-05 0 ] 119 : [ 11.9 763 1.92574e-05 0 ] 120 : [ 12 763 1.56617e-05 0 ] 121 : [ 12.1 763 1.27482e-05 0 ] 122 : [ 12.2 763 1.03723e-05 0 ] 123 : [ 12.3 763 8.43561e-06 0 ] 124 : [ 12.4 763 6.86636e-06 0 ] 125 : [ 12.5 763 5.5867e-06 0 ] 126 : [ 12.6 763 4.54355e-06 0 ] 127 : [ 12.7 763 3.69832e-06 0 ] 128 : [ 12.8 763 3.00908e-06 0 ] 129 : [ 12.9 763 2.44722e-06 0 ] 130 : [ 13 763 1.99197e-06 0 ] 131 : [ 13.1 763 1.62074e-06 0 ] 132 : [ 13.2 763 1.31811e-06 0 ] 133 : [ 13.3 763 1.07291e-06 0 ] 134 : [ 13.4 763 8.72953e-07 0 ] 135 : [ 13.5 763 7.09955e-07 0 ] 136 : [ 13.6 763 5.77884e-07 0 ] 137 : [ 13.7 763 4.70185e-07 0 ] 138 : [ 13.8 763 3.82393e-07 0 ] 139 : [ 13.9 763 3.11257e-07 0 ] 140 : [ 14 763 2.53249e-07 0 ] 141 : [ 14.1 763 2.05962e-07 0 ] 142 : [ 14.2 763 1.67648e-07 0 ] 143 : [ 14.3 763 1.36404e-07 0 ] 144 : [ 14.4 763 1.10934e-07 0 ] 145 : [ 14.5 763 9.02976e-08 0 ] 146 : [ 14.6 763 7.34691e-08 0 ] 147 : [ 14.7 763 5.9751e-08 0 ] 148 : [ 14.8 763 4.86356e-08 0 ] 149 : [ 14.9 763 3.95716e-08 0 ] 150 : [ 15 763 3.21828e-08 0 ] field 1: [ t infected susceptible removed ] 0 : [ 0 1 762 0 ] 1 : [ 0.1 1.24347 761.757 0 ] 2 : [ 0.2 1.54537 761.455 0 ] 3 : [ 0.3 1.9195 761.081 0 ] 4 : [ 0.4 2.38618 760.614 0 ] 5 : [ 0.5 2.9645 760.036 0 ] 6 : [ 0.6 3.68065 759.319 0 ] 7 : [ 0.7 4.57309 758.427 0 ] 8 : [ 0.8 5.67771 757.322 0 ] 9 : [ 0.9 7.04364 755.956 0 ] 10 : [ 1 8.74267 754.257 0 ] 11 : [ 1.1 10.8409 752.159 0 ] 12 : [ 1.2 13.4284 749.572 0 ] 13 : [ 1.3 16.6356 746.364 0 ] 14 : [ 1.4 20.5797 742.42 0 ] 15 : [ 1.5 25.4182 737.582 0 ] 16 : [ 1.6 31.3759 731.624 0 ] 17 : [ 1.7 38.6445 724.355 0 ] 18 : [ 1.8 47.4758 715.524 0 ] 19 : [ 1.9 58.2178 704.782 0 ] 20 : [ 2 71.1349 691.865 0 ] 21 : [ 2.1 86.5574 676.443 0 ] 22 : [ 2.2 104.913 658.087 0 ] 23 : [ 2.3 126.431 636.569 0 ] 24 : [ 2.4 151.364 611.636 0 ] 25 : [ 2.5 179.976 583.024 0 ] 26 : [ 2.6 212.162 550.838 0 ] 27 : [ 2.7 247.735 515.265 0 ] 28 : [ 2.8 286.366 476.634 0 ] 29 : [ 2.9 327.306 435.694 0 ] 30 : [ 3 369.711 393.289 0 ] 31 : [ 3.1 412.579 350.421 0 ] 32 : [ 3.2 454.825 308.175 0 ] 33 : [ 3.3 495.453 267.547 0 ] 34 : [ 3.4 533.513 229.487 0 ] 35 : [ 3.5 568.417 194.583 0 ] 36 : [ 3.6 599.766 163.234 0 ] 37 : [ 3.7 627.274 135.726 0 ] 38 : [ 3.8 651.093 111.907 0 ] 39 : [ 3.9 671.413 91.5869 0 ] 40 : [ 4 688.44 74.5605 0 ] 41 : [ 4.1 702.626 60.3736 0 ] 42 : [ 4.2 714.339 48.6607 0 ] 43 : [ 4.3 723.88 39.1196 0 ] 44 : [ 4.4 731.652 31.3476 0 ] 45 : [ 4.5 737.95 25.0501 0 ] 46 : [ 4.6 743 20.0003 0 ] 47 : [ 4.7 747.063 15.9371 0 ] 48 : [ 4.8 750.322 12.6777 0 ] 49 : [ 4.9 752.914 10.0856 0 ] 50 : [ 5 754.987 8.01342 0 ] 51 : [ 5.1 756.64 6.35967 0 ] 52 : [ 5.2 757.95 5.0501 0 ] 53 : [ 5.3 758.993 4.00658 0 ] 54 : [ 5.4 759.824 3.17598 0 ] 55 : [ 5.5 760.48 2.51966 0 ] 56 : [ 5.6 761.002 1.99754 0 ] 57 : [ 5.7 761.418 1.58249 0 ] 58 : [ 5.8 761.745 1.25489 0 ] 59 : [ 5.9 762.006 0.994483 0 ] 60 : [ 6 762.212 0.78762 0 ] 61 : [ 6.1 762.376 0.624423 0 ] 62 : [ 6.2 762.505 0.494757 0 ] 63 : [ 6.3 762.608 0.391784 0 ] 64 : [ 6.4 762.689 0.31057 0 ] 65 : [ 6.5 762.754 0.246055 0 ] 66 : [ 6.6 762.805 0.19483 0 ] 67 : [ 6.7 762.846 0.154434 0 ] 68 : [ 6.8 762.878 0.122348 0 ] 69 : [ 6.9 762.903 0.0968732 0 ] 70 : [ 7 762.923 0.0767855 0 ] 71 : [ 7.1 762.939 0.0608306 0 ] 72 : [ 7.2 762.952 0.0481639 0 ] 73 : [ 7.3 762.962 0.0381761 0 ] 74 : [ 7.4 762.97 0.0302433 0 ] 75 : [ 7.5 762.976 0.0239456 0 ] 76 : [ 7.6 762.981 0.0189798 0 ] 77 : [ 7.7 762.985 0.0150358 0 ] 78 : [ 7.8 762.988 0.0119048 0 ] 79 : [ 7.9 762.991 0.00943595 0 ] 80 : [ 8 762.993 0.00747515 0 ] 81 : [ 8.1 762.994 0.00591852 0 ] 82 : [ 8.2 762.995 0.00469112 0 ] 83 : [ 8.3 762.996 0.0037163 0 ] 84 : [ 8.4 762.997 0.00294241 0 ] 85 : [ 8.5 762.998 0.0023322 0 ] 86 : [ 8.6 762.998 0.00184757 0 ] 87 : [ 8.7 762.999 0.00146282 0 ] 88 : [ 8.8 762.999 0.00115946 0 ] 89 : [ 8.9 762.999 0.000918521 0 ] 90 : [ 9 762.999 0.000727246 0 ] 91 : [ 9.1 762.999 0.000576427 0 ] 92 : [ 9.2 763 0.000456644 0 ] 93 : [ 9.3 763 0.000361551 0 ] 94 : [ 9.4 763 0.000286572 0 ] 95 : [ 9.5 763 0.000227021 0 ] 96 : [ 9.6 763 0.000179746 0 ] 97 : [ 9.7 763 0.000142469 0 ] 98 : [ 9.8 763 0.000112864 0 ] 99 : [ 9.9 763 8.93608e-05 0 ] 100 : [ 10 763 7.08288e-05 0 ] 101 : [ 10.1 763 5.61104e-05 0 ] 102 : [ 10.2 763 4.44258e-05 0 ] 103 : [ 10.3 763 3.52126e-05 0 ] 104 : [ 10.4 763 2.78953e-05 0 ] 105 : [ 10.5 763 2.20863e-05 0 ] 106 : [ 10.6 763 1.7506e-05 0 ] 107 : [ 10.7 763 1.38682e-05 0 ] 108 : [ 10.8 763 1.09802e-05 0 ] 109 : [ 10.9 763 8.70313e-06 0 ] 110 : [ 11 763 6.89459e-06 0 ] 111 : [ 11.1 763 5.45884e-06 0 ] 112 : [ 11.2 763 4.32677e-06 0 ] 113 : [ 11.3 763 3.42765e-06 0 ] 114 : [ 11.4 763 2.71387e-06 0 ] 115 : [ 11.5 763 2.15106e-06 0 ] 116 : [ 11.6 763 1.70406e-06 0 ] 117 : [ 11.7 763 1.3492e-06 0 ] 118 : [ 11.8 763 1.0694e-06 0 ] 119 : [ 11.9 763 8.47176e-07 0 ] 120 : [ 12 763 6.70758e-07 0 ] 121 : [ 12.1 763 5.31654e-07 0 ] 122 : [ 12.2 763 4.21175e-07 0 ] 123 : [ 12.3 763 3.33468e-07 0 ] 124 : [ 12.4 763 2.64312e-07 0 ] 125 : [ 12.5 763 2.09387e-07 0 ] 126 : [ 12.6 763 1.65784e-07 0 ] 127 : [ 12.7 763 1.31403e-07 0 ] 128 : [ 12.8 763 1.04097e-07 0 ] 129 : [ 12.9 763 8.24197e-08 0 ] 130 : [ 13 763 6.53272e-08 0 ] 131 : [ 13.1 763 5.1752e-08 0 ] 132 : [ 13.2 763 4.0975e-08 0 ] 133 : [ 13.3 763 3.24775e-08 0 ] 134 : [ 13.4 763 2.57286e-08 0 ] 135 : [ 13.5 763 2.03708e-08 0 ] 136 : [ 13.6 763 1.61462e-08 0 ] 137 : [ 13.7 763 1.2791e-08 0 ] 138 : [ 13.8 763 1.01274e-08 0 ] 139 : [ 13.9 763 8.02711e-09 0 ] 140 : [ 14 763 6.35905e-09 0 ] 141 : [ 14.1 763 5.03483e-09 0 ] 142 : [ 14.2 763 3.99069e-09 0 ] 143 : [ 14.3 763 3.16141e-09 0 ] 144 : [ 14.4 763 2.50307e-09 0 ] 145 : [ 14.5 763 1.98398e-09 0 ] 146 : [ 14.6 763 1.5717e-09 0 ] 147 : [ 14.7 763 1.2444e-09 0 ] 148 : [ 14.8 763 9.86335e-10 0 ] 149 : [ 14.9 763 7.81372e-10 0 ] 150 : [ 15 763 6.18657e-10 0 ] field 2: [ t infected susceptible removed ] 0 : [ 0 1 762 0 ] 1 : [ 0.1 1.27293 761.727 0 ] 2 : [ 0.2 1.61924 761.381 0 ] 3 : [ 0.3 2.05837 760.942 0 ] 4 : [ 0.4 2.61923 760.381 0 ] 5 : [ 0.5 3.33032 759.67 0 ] 6 : [ 0.6 4.23109 758.769 0 ] 7 : [ 0.7 5.38005 757.62 0 ] 8 : [ 0.8 6.8344 756.166 0 ] 9 : [ 0.9 8.67292 754.327 0 ] 10 : [ 1 11.0117 751.988 0 ] 11 : [ 1.1 13.9622 749.038 0 ] 12 : [ 1.2 17.6766 745.323 0 ] 13 : [ 1.3 22.3758 740.624 0 ] 14 : [ 1.4 28.2646 734.735 0 ] 15 : [ 1.5 35.6157 727.384 0 ] 16 : [ 1.6 44.8148 718.185 0 ] 17 : [ 1.7 56.1899 706.81 0 ] 18 : [ 1.8 70.1576 692.842 0 ] 19 : [ 1.9 87.2705 675.73 0 ] 20 : [ 2 107.901 655.099 0 ] 21 : [ 2.1 132.465 630.535 0 ] 22 : [ 2.2 161.423 601.577 0 ] 23 : [ 2.3 194.801 568.199 0 ] 24 : [ 2.4 232.507 530.493 0 ] 25 : [ 2.5 274.241 488.759 0 ] 26 : [ 2.6 319.109 443.891 0 ] 27 : [ 2.7 366.025 396.975 0 ] 28 : [ 2.8 413.647 349.353 0 ] 29 : [ 2.9 460.49 302.51 0 ] 30 : [ 3 505.2 257.8 0 ] 31 : [ 3.1 546.52 216.48 0 ] 32 : [ 3.2 583.737 179.263 0 ] 33 : [ 3.3 616.428 146.572 0 ] 34 : [ 3.4 644.371 118.629 0 ] 35 : [ 3.5 667.9 95.0997 0 ] 36 : [ 3.6 687.387 75.6135 0 ] 37 : [ 3.7 703.206 59.7944 0 ] 38 : [ 3.8 715.982 47.0181 0 ] 39 : [ 3.9 726.204 36.7962 0 ] 40 : [ 4 734.266 28.7338 0 ] 41 : [ 4.1 740.634 22.3663 0 ] 42 : [ 4.2 745.637 17.3627 0 ] 43 : [ 4.3 749.527 13.4735 0 ] 44 : [ 4.4 752.564 10.4358 0 ] 45 : [ 4.5 754.93 8.06956 0 ] 46 : [ 4.6 756.757 6.24323 0 ] 47 : [ 4.7 758.176 4.8243 0 ] 48 : [ 4.8 759.276 3.72359 0 ] 49 : [ 4.9 760.123 2.87682 0 ] 50 : [ 5 760.779 2.22056 0 ] 51 : [ 5.1 761.288 1.71246 0 ] 52 : [ 5.2 761.678 1.32218 0 ] 53 : [ 5.3 761.98 1.02005 0 ] 54 : [ 5.4 762.214 0.786339 0 ] 55 : [ 5.5 762.393 0.606945 0 ] 56 : [ 5.6 762.532 0.468144 0 ] 57 : [ 5.7 762.639 0.360819 0 ] 58 : [ 5.8 762.722 0.278464 0 ] 59 : [ 5.9 762.785 0.21476 0 ] 60 : [ 6 762.834 0.165511 0 ] 61 : [ 6.1 762.872 0.127726 0 ] 62 : [ 6.2 762.901 0.0985013 0 ] 63 : [ 6.3 762.924 0.07591 0 ] 64 : [ 6.4 762.941 0.0585787 0 ] 65 : [ 6.5 762.955 0.0451744 0 ] 66 : [ 6.6 762.965 0.034813 0 ] 67 : [ 6.7 762.973 0.0268644 0 ] 68 : [ 6.8 762.979 0.0207169 0 ] 69 : [ 6.9 762.984 0.0159651 0 ] 70 : [ 7 762.988 0.0123198 0 ] 71 : [ 7.1 762.99 0.00950055 0 ] 72 : [ 7.2 762.993 0.00732139 0 ] 73 : [ 7.3 762.994 0.00564969 0 ] 74 : [ 7.4 762.996 0.00435682 0 ] 75 : [ 7.5 762.997 0.00335748 0 ] 76 : [ 7.6 762.997 0.00259086 0 ] 77 : [ 7.7 762.998 0.00199797 0 ] 78 : [ 7.8 762.998 0.00153968 0 ] 79 : [ 7.9 762.999 0.00118812 0 ] 80 : [ 8 762.999 0.000916233 0 ] 81 : [ 8.1 762.999 0.000706073 0 ] 82 : [ 8.2 762.999 0.000544853 0 ] 83 : [ 8.3 763 0.000420169 0 ] 84 : [ 8.4 763 0.000323793 0 ] 85 : [ 8.5 763 0.00024986 0 ] 86 : [ 8.6 763 0.000192682 0 ] 87 : [ 8.7 763 0.000148486 0 ] 88 : [ 8.8 763 0.000114581 0 ] 89 : [ 8.9 763 8.83606e-05 0 ] 90 : [ 9 763 6.80929e-05 0 ] 91 : [ 9.1 763 5.2545e-05 0 ] 92 : [ 9.2 763 4.05206e-05 0 ] 93 : [ 9.3 763 3.12262e-05 0 ] 94 : [ 9.4 763 2.40962e-05 0 ] 95 : [ 9.5 763 1.8582e-05 0 ] 96 : [ 9.6 763 1.43198e-05 0 ] 97 : [ 9.7 763 1.10501e-05 0 ] 98 : [ 9.8 763 8.52139e-06 0 ] 99 : [ 9.9 763 6.5668e-06 0 ] 100 : [ 10 763 5.06738e-06 0 ] 101 : [ 10.1 763 3.90776e-06 0 ] 102 : [ 10.2 763 3.01142e-06 0 ] 103 : [ 10.3 763 2.32381e-06 0 ] 104 : [ 10.4 763 1.79203e-06 0 ] 105 : [ 10.5 763 1.38098e-06 0 ] 106 : [ 10.6 763 1.06566e-06 0 ] 107 : [ 10.7 763 8.21793e-07 0 ] 108 : [ 10.8 763 6.33295e-07 0 ] 109 : [ 10.9 763 4.88692e-07 0 ] 110 : [ 11 763 3.7686e-07 0 ] 111 : [ 11.1 763 2.90418e-07 0 ] 112 : [ 11.2 763 2.24106e-07 0 ] 113 : [ 11.3 763 1.72821e-07 0 ] 114 : [ 11.4 763 1.3318e-07 0 ] 115 : [ 11.5 763 1.02771e-07 0 ] 116 : [ 11.6 763 7.92528e-08 0 ] 117 : [ 11.7 763 6.10742e-08 0 ] 118 : [ 11.8 763 4.71289e-08 0 ] 119 : [ 11.9 763 3.63439e-08 0 ] 120 : [ 12 763 2.80076e-08 0 ] 121 : [ 12.1 763 2.16125e-08 0 ] 122 : [ 12.2 763 1.66667e-08 0 ] 123 : [ 12.3 763 1.28438e-08 0 ] 124 : [ 12.4 763 9.91111e-09 0 ] 125 : [ 12.5 763 7.64305e-09 0 ] 126 : [ 12.6 763 5.88993e-09 0 ] 127 : [ 12.7 763 4.54506e-09 0 ] 128 : [ 12.8 763 3.50497e-09 0 ] 129 : [ 12.9 763 2.70102e-09 0 ] 130 : [ 13 763 2.08428e-09 0 ] 131 : [ 13.1 763 1.60732e-09 0 ] 132 : [ 13.2 763 1.23864e-09 0 ] 133 : [ 13.3 763 9.55816e-10 0 ] 134 : [ 13.4 763 7.37087e-10 0 ] 135 : [ 13.5 763 5.68018e-10 0 ] 136 : [ 13.6 763 4.3832e-10 0 ] 137 : [ 13.7 763 3.38015e-10 0 ] 138 : [ 13.8 763 2.60483e-10 0 ] 139 : [ 13.9 763 2.01006e-10 0 ] 140 : [ 14 763 1.55008e-10 0 ] 141 : [ 14.1 763 1.19453e-10 0 ] 142 : [ 14.2 763 9.21778e-11 0 ] 143 : [ 14.3 763 7.10838e-11 0 ] 144 : [ 14.4 763 5.4779e-11 0 ] 145 : [ 14.5 763 4.22711e-11 0 ] 146 : [ 14.6 763 3.25978e-11 0 ] 147 : [ 14.7 763 2.51207e-11 0 ] 148 : [ 14.8 763 1.93848e-11 0 ] 149 : [ 14.9 763 1.49488e-11 0 ] 150 : [ 15 763 1.15199e-11 0 ]] .. GENERATED FROM PYTHON SOURCE LINES 67-69 Visualize the time evolution of the ``infected`` over time, depending on the `ìnfection_rate`` value: .. GENERATED FROM PYTHON SOURCE LINES 69-77 .. code-block:: Python gridLayout = Y.draw() graph = gridLayout.getGraph(0, 0) graph.setTitle("") graph.setXTitle("Simulation time (days)") graph.setYTitle(function.getOutputDescription()[0]) graph.setLegends([str(line[0]) for line in X]) view = viewer.View(graph, legend_kw={"title": "infection rate"}) .. image-sg:: /auto_example/p2f/epid/images/sphx_glr_plot_dyn_basics_002.png :alt: plot dyn basics :srcset: /auto_example/p2f/epid/images/sphx_glr_plot_dyn_basics_002.png :class: sphx-glr-single-img .. GENERATED FROM PYTHON SOURCE LINES 78-79 Show all plots .. GENERATED FROM PYTHON SOURCE LINES 79-80 .. code-block:: Python view.ShowAll() .. rst-class:: sphx-glr-timing **Total running time of the script:** (0 minutes 0.278 seconds) .. _sphx_glr_download_auto_example_p2f_epid_plot_dyn_basics.py: .. only:: html .. container:: sphx-glr-footer sphx-glr-footer-example .. container:: sphx-glr-download sphx-glr-download-jupyter :download:`Download Jupyter notebook: plot_dyn_basics.ipynb ` .. container:: sphx-glr-download sphx-glr-download-python :download:`Download Python source code: plot_dyn_basics.py ` .. container:: sphx-glr-download sphx-glr-download-zip :download:`Download zipped: plot_dyn_basics.zip `