Index

_

__init__() (otagrum.ContinuousBayesianNetwork method) (otagrum.ContinuousBayesianNetworkFactory method) (otagrum.ContinuousMIIC method) (otagrum.ContinuousPC method) (otagrum.ContinuousTTest method) (otagrum.CorrectedMutualInformation method) (otagrum.JunctionTreeBernsteinCopula method) (otagrum.JunctionTreeBernsteinCopulaFactory method) (otagrum.NamedDAG method) (otagrum.NamedJunctionTree method) (otagrum.TabuList method) (otagrum.Utils method)

A

abs() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) acos() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) acosh() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) addForbiddenArc() (otagrum.ContinuousMIIC method) addMandatoryArc() (otagrum.ContinuousMIIC method)

asin() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) asinh() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) atan() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) atanh() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method)

B

build() (otagrum.ContinuousBayesianNetworkFactory method) (otagrum.JunctionTreeBernsteinCopulaFactory method) buildAsContinuousBayesianNetwork() (otagrum.ContinuousBayesianNetworkFactory method)

buildAsJunctionTreeBernsteinCopula() (otagrum.JunctionTreeBernsteinCopulaFactory method) buildEstimator() (otagrum.ContinuousBayesianNetworkFactory method) (otagrum.JunctionTreeBernsteinCopulaFactory method)

C

cbrt() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) clearCache() (otagrum.ContinuousTTest method) clearCacheLevel() (otagrum.ContinuousTTest method) clearCaches() (otagrum.CorrectedMutualInformation method) compute2PtCorrectedInformation() (otagrum.CorrectedMutualInformation method) compute3PtCorrectedInformation() (otagrum.CorrectedMutualInformation method) computeBilateralConfidenceInterval() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeBilateralConfidenceIntervalWithMarginalProbability() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeCDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeCDFGradient() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeCharacteristicFunction() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeComplementaryCDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeConditionalCDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeConditionalDDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeConditionalPDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeConditionalQuantile() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeDDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeEntropy() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeGeneratingFunction() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeInverseSurvivalFunction() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeLogCharacteristicFunction() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeLogGeneratingFunction() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeLogPDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeLogPDFGradient() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeLowerExtremalDependenceMatrix() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeLowerTailDependenceMatrix() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method)

computeMinimumVolumeInterval() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeMinimumVolumeIntervalWithMarginalProbability() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeMinimumVolumeLevelSet() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeMinimumVolumeLevelSetWithThreshold() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computePDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computePDFGradient() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeProbability() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeQuantile() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeRadialDistributionCDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeScalarQuantile() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeSequentialConditionalCDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeSequentialConditionalDDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeSequentialConditionalPDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeSequentialConditionalQuantile() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeSurvivalFunction() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeUnilateralConfidenceInterval() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeUnilateralConfidenceIntervalWithMarginalProbability() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeUpperExtremalDependenceMatrix() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) computeUpperTailDependenceMatrix() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) ContinuousBayesianNetwork (class in otagrum) ContinuousBayesianNetworkFactory (class in otagrum) ContinuousMIIC (class in otagrum) ContinuousPC (class in otagrum) ContinuousTTest (class in otagrum) CorrectedMutualInformation (class in otagrum) cos() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) cosh() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method)

D

Discretize() (otagrum.Utils static method) drawCDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawLogPDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawLowerExtremalDependenceFunction() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawLowerTailDependenceFunction() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawMarginal1DCDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawMarginal1DLogPDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawMarginal1DPDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawMarginal1DSurvivalFunction() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method)

drawMarginal2DCDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawMarginal2DLogPDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawMarginal2DPDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawMarginal2DSurvivalFunction() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawPDF() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawQuantile() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawSurvivalFunction() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawUpperExtremalDependenceFunction() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) drawUpperTailDependenceFunction() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method)

E

exp() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method)

F

FromMarginal() (otagrum.Utils static method)

FromPotential() (otagrum.Utils static method)

G

getAlpha() (otagrum.ContinuousMIIC method) (otagrum.ContinuousTTest method) (otagrum.CorrectedMutualInformation method) getBestScore() (otagrum.TabuList method) getBinNumber() (otagrum.JunctionTreeBernsteinCopula method) getBootstrapSize() (otagrum.ContinuousBayesianNetworkFactory method) (otagrum.JunctionTreeBernsteinCopulaFactory method) getCDFEpsilon() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getCentralMoment() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getChildren() (otagrum.NamedDAG method) getCholesky() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getClassName() (otagrum.ContinuousBayesianNetwork method) (otagrum.ContinuousBayesianNetworkFactory method) (otagrum.JunctionTreeBernsteinCopula method) (otagrum.JunctionTreeBernsteinCopulaFactory method) (otagrum.NamedDAG method) getClique() (otagrum.NamedJunctionTree method) getCliquesCollection() (otagrum.NamedJunctionTree method) getCopula() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getCopulaAtNode() (otagrum.ContinuousBayesianNetwork method) getCopulas() (otagrum.ContinuousBayesianNetwork method) getCopulaSample() (otagrum.JunctionTreeBernsteinCopula method) getCorrelation() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getCovariance() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getDAG() (otagrum.ContinuousBayesianNetwork method) (otagrum.NamedDAG method) getDataDescription() (otagrum.ContinuousTTest method) (otagrum.CorrectedMutualInformation method) getDescription() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) (otagrum.NamedDAG method) (otagrum.NamedJunctionTree method) getDimension() (otagrum.ContinuousBayesianNetwork method) (otagrum.ContinuousTTest method) (otagrum.CorrectedMutualInformation method) (otagrum.JunctionTreeBernsteinCopula method) getDispersionIndicator() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getIntegrationNodesNumber() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getInverseCholesky() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getInverseIsoProbabilisticTransformation() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getIsoProbabilisticTransformation() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) GetK() (otagrum.ContinuousTTest static method) getKendallTau() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getKurtosis() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getLatentVariables() (otagrum.ContinuousMIIC method) getMarginal() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) (otagrum.NamedJunctionTree method) getMarginals() (otagrum.ContinuousBayesianNetwork method) getMaxParents() (otagrum.TabuList method) getMean() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getMoment() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getName() (otagrum.ContinuousBayesianNetwork method) (otagrum.ContinuousBayesianNetworkFactory method) (otagrum.JunctionTreeBernsteinCopula method) (otagrum.JunctionTreeBernsteinCopulaFactory method) (otagrum.NamedDAG method)

getNeighbours() (otagrum.NamedJunctionTree method) getNodes() (otagrum.NamedJunctionTree method) getOrderMaxFirst() (otagrum.NamedJunctionTree method) getParameter() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getParameterDescription() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getParameterDimension() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getParametersCollection() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getParents() (otagrum.ContinuousBayesianNetwork method) (otagrum.NamedDAG method) getPDFEpsilon() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getPearsonCorrelation() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getPositionIndicator() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getProbabilities() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getPValue() (otagrum.ContinuousPC method) getRange() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getRealization() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getRestarts() (otagrum.TabuList method) getRoughness() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getSample() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getSampleByInversion() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getSampleByQMC() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getSeparator() (otagrum.NamedJunctionTree method) getSeparatorsCollection() (otagrum.NamedJunctionTree method) getSepset() (otagrum.ContinuousPC method) getSepsetNames() (otagrum.ContinuousPC method) getShapeMatrix() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getShiftedMoment() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getSingularities() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getSize() (otagrum.CorrectedMutualInformation method) (otagrum.NamedDAG method) (otagrum.NamedJunctionTree method) getSkewness() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getSpearmanCorrelation() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getStandardDeviation() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getStandardDistribution() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getStandardRepresentative() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getSupport() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) getTopologicalOrder() (otagrum.NamedDAG method) getTrace() (otagrum.ContinuousPC method) getTTest() (otagrum.ContinuousPC method) (otagrum.ContinuousTTest method) getTTestWithoutCorrections() (otagrum.ContinuousTTest method) getVerbosity() (otagrum.ContinuousMIIC method) (otagrum.ContinuousPC method) (otagrum.TabuList method)

H

hasEllipticalCopula() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) hasIndependentCopula() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method)

hasName() (otagrum.ContinuousBayesianNetwork method) (otagrum.ContinuousBayesianNetworkFactory method) (otagrum.JunctionTreeBernsteinCopula method) (otagrum.JunctionTreeBernsteinCopulaFactory method) (otagrum.NamedDAG method)

I

idFromName() (otagrum.ContinuousPC method) inverse() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) isContinuous() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) isCopula() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) isDiscrete() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method)

isElliptical() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) isIndep() (otagrum.ContinuousTTest method) isIndepFromTest() (otagrum.ContinuousTTest static method) isIntegral() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) isRemoved() (otagrum.ContinuousPC method)

J

JunctionTreeBernsteinCopula (class in otagrum)

JunctionTreeBernsteinCopulaFactory (class in otagrum)

L

learnDAG() (otagrum.ContinuousMIIC method) (otagrum.ContinuousPC method) (otagrum.TabuList method) learnJunctionTree() (otagrum.ContinuousPC method) learnPDAG() (otagrum.ContinuousMIIC method) (otagrum.ContinuousPC method)

learnSkeleton() (otagrum.ContinuousMIIC method) (otagrum.ContinuousPC method) ln() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) log() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method)

N

NamedDAG (class in otagrum)

NamedJunctionTree (class in otagrum)

P

PDAGtoDot() (otagrum.ContinuousPC method)

S

setAlpha() (otagrum.ContinuousMIIC method) (otagrum.ContinuousTTest method) (otagrum.CorrectedMutualInformation method) setBootstrapSize() (otagrum.ContinuousBayesianNetworkFactory method) (otagrum.JunctionTreeBernsteinCopulaFactory method) setCliquesOrder() (otagrum.JunctionTreeBernsteinCopula method) setCMode() (otagrum.ContinuousMIIC method) (otagrum.CorrectedMutualInformation method) (otagrum.TabuList method) setCopulaSample() (otagrum.JunctionTreeBernsteinCopula method) setDAGAndMarginalsAndCopulas() (otagrum.ContinuousBayesianNetwork method) setDescription() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) setIntegrationNodesNumber() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) setKMode() (otagrum.ContinuousMIIC method) (otagrum.CorrectedMutualInformation method) setName() (otagrum.ContinuousBayesianNetwork method) (otagrum.ContinuousBayesianNetworkFactory method) (otagrum.JunctionTreeBernsteinCopula method) (otagrum.JunctionTreeBernsteinCopulaFactory method) (otagrum.NamedDAG method)

setParameter() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) setParametersCollection() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) setVerbosity() (otagrum.ContinuousMIIC method) (otagrum.ContinuousPC method) (otagrum.TabuList method) sin() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) sinh() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) skeletonToDot() (otagrum.ContinuousPC method) sqr() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) sqrt() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method)

T

TabuList (class in otagrum) tan() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method)

tanh() (otagrum.ContinuousBayesianNetwork method) (otagrum.JunctionTreeBernsteinCopula method) toDot() (otagrum.NamedDAG method)

U

Utils (class in otagrum)