KrigingResult

class KrigingResult(*args)

Kriging result.

Available constructors:

KrigingResult(inputSample, outputSample, metaModel, residuals, relativeErrors, basis, trendCoefficients, covarianceModel, covarianceCoefficients)

KrigingResult(inputSample, outputSample, metaModel, residuals, relativeErrors, basis, trendCoefficients, covarianceModel, covarianceCoefficients, covarianceCholeskyFactor, covarianceHMatrix)

Parameters:
inputSample, outputSample2-d sequence of float

The samples (\vect{x}_k)_{1 \leq k \leq N} \in \Rset^d and (\vect{y}_k)_{1 \leq k \leq N}\in \Rset^p.

metaModelFunction

The meta model: \tilde{\cM}: \Rset^d \rightarrow \Rset^p, defined in (3).

residualsPoint

The residual errors.

relativeErrorsPoint

The relative errors.

basiscollection of Basis

Collection of the p functional basis: (\varphi_j^l)_{1 \leq j \leq n_l} for each l \in [1, p] with \varphi_j^l: \Rset^d \rightarrow \Rset. Its size must be equal to zero if the trend is not estimated.

trendCoefficientscollection of Point

The trend coeffient vectors (\vect{\alpha}^1, \dots, \vect{\alpha}^p).

covarianceModelCovarianceModel

Covariance function of the Gaussian process.

covarianceCoefficients2-d sequence of float

The \vect{\gamma} defined in (2).

covarianceCholeskyFactorTriangularMatrix

The Cholesky factor \mat{L} of \mat{C}.

covarianceHMatrixHMatrix

The hmat implementation of \mat{L}.

Notes

The Kriging meta model \tilde{\cM} is defined by:

(1)\tilde{\cM}(\vect{x}) =  \vect{\mu}(\vect{x}) + \Expect{\vect{Y}(\omega, \vect{x})\,| \,\cC}

where \cC is the condition \vect{Y}(\omega, \vect{x}_k) = \vect{y}_k for each k \in [1, N].

Equation (1) writes:

\tilde{\cM}(\vect{x}) = \vect{\mu}(\vect{x}) + \Cov{\vect{Y}(\omega, \vect{x}), (\vect{Y}(\omega,\vect{x}_1),\dots,\vect{Y}(\omega, \vect{x}_N))}\vect{\gamma}

where

\Cov{\vect{Y}(\omega, \vect{x}), (\vect{Y}(\omega, \vect{x}_1),\dots,\vect{Y}(\omega, \vect{x}_N))} = \left(\mat{C}(\vect{x},\vect{x}_1)|\dots|\mat{C}(\vect{x},\vect{x}_N)\right)\in \cM_{p,NP}(\Rset)

and

(2)\vect{\gamma} = \mat{C}^{-1}(\vect{y}-\vect{m})

At the end, the meta model writes:

(3)\tilde{\cM}(\vect{x}) = \vect{\mu}(\vect{x}) + \sum_{i=1}^N \gamma_i  \mat{C}(\vect{x},\vect{x}_i)

Examples

Create the model \cM: \Rset \mapsto \Rset and the samples:

>>> import openturns as ot
>>> f = ot.SymbolicFunction(['x'],  ['x * sin(x)'])
>>> sampleX = [[1.0], [2.0], [3.0], [4.0], [5.0], [6.0]]
>>> sampleY = f(sampleX)

Create the algorithm:

>>> basis = ot.Basis([ot.SymbolicFunction(['x'], ['x']), ot.SymbolicFunction(['x'], ['x^2'])])
>>> covarianceModel = ot.GeneralizedExponential([2.0], 2.0)
>>> algoKriging = ot.KrigingAlgorithm(sampleX, sampleY, covarianceModel, basis)
>>> algoKriging.run()

Get the result:

>>> resKriging = algoKriging.getResult()

Get the meta model:

>>> metaModel = resKriging.getMetaModel()

Methods

__call__(*args)

Compute the conditional Gaussian distribution on a new point / sample conditionally to the observed paths.

getBasisCollection()

Accessor to the collection of basis.

getClassName()

Accessor to the object's name.

getConditionalCovariance(*args)

Compute the conditional covariance of the Gaussian process on a point (or several points).

getConditionalMarginalCovariance(*args)

Compute the conditional covariance of the Gaussian process on a point (or several points).

getConditionalMarginalVariance(*args)

Compute the conditional variance of the Gaussian process on a point (or several points).

getConditionalMean(*args)

Compute the conditional mean of the Gaussian process on a point or a sample of points.

getCovarianceCoefficients()

Accessor to the covariance coefficients.

getCovarianceModel()

Accessor to the covariance model.

getId()

Accessor to the object's id.

getInputSample()

Accessor to the input sample.

getMetaModel()

Accessor to the metamodel.

getName()

Accessor to the object's name.

getOutputSample()

Accessor to the output sample.

getRelativeErrors()

Accessor to the relative errors.

getResiduals()

Accessor to the residuals.

getShadowedId()

Accessor to the object's shadowed id.

getTrendCoefficients()

Accessor to the trend coefficients.

getVisibility()

Accessor to the object's visibility state.

hasName()

Test if the object is named.

hasVisibleName()

Test if the object has a distinguishable name.

setInputSample(sampleX)

Accessor to the input sample.

setMetaModel(metaModel)

Accessor to the metamodel.

setName(name)

Accessor to the object's name.

setOutputSample(sampleY)

Accessor to the output sample.

setRelativeErrors(relativeErrors)

Accessor to the relative errors.

setResiduals(residuals)

Accessor to the residuals.

setShadowedId(id)

Accessor to the object's shadowed id.

setVisibility(visible)

Accessor to the object's visibility state.

getModel

setModel

__init__(*args)
getBasisCollection()

Accessor to the collection of basis.

Returns:
basisCollectioncollection of Basis

Collection of the p function basis: (\varphi_j^l)_{1 \leq j \leq n_l} for each l \in [1, p] with \varphi_j^l: \Rset^d \rightarrow \Rset.

Notes

If the trend is not estimated, the collection is empty.

getClassName()

Accessor to the object’s name.

Returns:
class_namestr

The object class name (object.__class__.__name__).

getConditionalCovariance(*args)

Compute the conditional covariance of the Gaussian process on a point (or several points).

Available usages:

getConditionalCovariance(x)

getConditionalCovariance(sampleX)

Parameters:
xsequence of float

The point \vect{x} where the conditional covariance of the output has to be evaluated.

sampleX2-d sequence of float

The sample (\vect{\xi}_1, \dots, \vect{\xi}_M) where the conditional covariance of the output has to be evaluated (M can be equal to 1).

Returns:
condCovCovarianceMatrix

The conditional covariance \Cov{\vect{Y}(\omega, \vect{x})\, | \,  \cC} at point \vect{x}. Or the conditional covariance matrix at the sample (\vect{\xi}_1, \dots, \vect{\xi}_M):

\left(
  \begin{array}{lcl}
    \Sigma_{11} & \dots & \Sigma_{1M} \\
    \dots  \\
    \Sigma_{M1} & \dots & \Sigma_{MM}
  \end{array}
\right)

where \Sigma_{ij} = \Cov{\vect{Y}(\omega, \vect{\xi}_i), \vect{Y}(\omega, \vect{\xi}_j)\, | \,  \cC}.

getConditionalMarginalCovariance(*args)

Compute the conditional covariance of the Gaussian process on a point (or several points).

Available usages:

getConditionalMarginalCovariance(x)

getConditionalMarginalCovariance(sampleX)

Parameters:
xsequence of float

The point \vect{x} where the conditional marginal covariance of the output has to be evaluated.

sampleX2-d sequence of float

The sample (\vect{\xi}_1, \dots, \vect{\xi}_M) where the conditional marginal covariance of the output has to be evaluated (M can be equal to 1).

Returns:
condCovCovarianceMatrix

The conditional covariance \Cov{\vect{Y}(\omega, \vect{x})\, | \,  \cC} at point \vect{x}.

condCovCovarianceMatrixCollection

The collection of conditional covariance matrices \Cov{\vect{Y}(\omega, \vect{\xi})\, | \,  \cC} at each point of the sample (\vect{\xi}_1, \dots, \vect{\xi}_M):

Notes

In case input parameter is a of type Sample, each element of the collection corresponds to the conditional covariance with respect to the input learning set (pointwise evaluation of the getConditionalCovariance).

getConditionalMarginalVariance(*args)

Compute the conditional variance of the Gaussian process on a point (or several points).

Available usages:

getConditionalMarginalVariance(x, marginalIndex)

getConditionalMarginalVariance(sampleX, marginalIndex)

getConditionalMarginalVariance(x, marginalIndices)

getConditionalMarginalVariance(sampleX, marginalIndices)

Parameters:
xsequence of float

The point \vect{x} where the conditional variance of the output has to be evaluated.

sampleX2-d sequence of float

The sample (\vect{\xi}_1, \dots, \vect{\xi}_M) where the conditional variance of the output has to be evaluated (M can be equal to 1).

marginalIndexint

Marginal of interest (for multiple outputs). Default value is 0

marginalIndicessequence of int

Marginals of interest (for multiple outputs).

Returns:
varfloat

Variance of interest. float if one point (x) and one marginal of interest (x, marginalIndex)

varPointsequence of float

The marginal variances

Notes

In case of fourth usage, the sequence of float is given as the concatenation of marginal variances for each point in sampleX.

getConditionalMean(*args)

Compute the conditional mean of the Gaussian process on a point or a sample of points.

Available usages:

getConditionalMean(x)

getConditionalMean(sampleX)

Parameters:
xsequence of float

The point \vect{x} where the conditional mean of the output has to be evaluated.

sampleX2-d sequence of float

The sample (\vect{\xi}_1, \dots, \vect{\xi}_M) where the conditional mean of the output has to be evaluated (M can be equal to 1).

Returns:
condMeanPoint

The conditional mean \Expect{\vect{Y}(\omega, \vect{x})\, | \,  \cC} at point \vect{x}. Or the conditional mean matrix at the sample (\vect{\xi}_1, \dots, \vect{\xi}_M):

\left(
  \begin{array}{l}
    \Expect{\vect{Y}(\omega, \vect{\xi}_1)\, | \,  \cC}\\
    \dots  \\
    \Expect{\vect{Y}(\omega, \vect{\xi}_M)\, | \,  \cC}
  \end{array}
\right)

getCovarianceCoefficients()

Accessor to the covariance coefficients.

Returns:
covCoeffSample

The \vect{\gamma} defined in (2).

getCovarianceModel()

Accessor to the covariance model.

Returns:
covModelCovarianceModel

The covariance model of the Gaussian process W with its optimized parameters.

getId()

Accessor to the object’s id.

Returns:
idint

Internal unique identifier.

getInputSample()

Accessor to the input sample.

Returns:
inputSampleSample

The input sample.

getMetaModel()

Accessor to the metamodel.

Returns:
metaModelFunction

Metamodel.

getName()

Accessor to the object’s name.

Returns:
namestr

The name of the object.

getOutputSample()

Accessor to the output sample.

Returns:
outputSampleSample

The output sample.

getRelativeErrors()

Accessor to the relative errors.

Returns:
relativeErrorsPoint

The relative errors defined as follows for each output of the model: \displaystyle \frac{\sum_{i=1}^N (y_i - \hat{y_i})^2}{N \Var{\vect{Y}}} with \vect{Y} the vector of the N model’s values y_i and \hat{y_i} the metamodel’s values.

getResiduals()

Accessor to the residuals.

Returns:
residualsPoint

The residual values defined as follows for each output of the model: \displaystyle \frac{\sqrt{\sum_{i=1}^N (y_i - \hat{y_i})^2}}{N} with y_i the N model’s values and \hat{y_i} the metamodel’s values.

getShadowedId()

Accessor to the object’s shadowed id.

Returns:
idint

Internal unique identifier.

getTrendCoefficients()

Accessor to the trend coefficients.

Returns:
trendCoefcollection of Point

The trend coefficients vectors (\vect{\alpha}^1, \dots, \vect{\alpha}^p)

getVisibility()

Accessor to the object’s visibility state.

Returns:
visiblebool

Visibility flag.

hasName()

Test if the object is named.

Returns:
hasNamebool

True if the name is not empty.

hasVisibleName()

Test if the object has a distinguishable name.

Returns:
hasVisibleNamebool

True if the name is not empty and not the default one.

setInputSample(sampleX)

Accessor to the input sample.

Parameters:
inputSampleSample

The input sample.

setMetaModel(metaModel)

Accessor to the metamodel.

Parameters:
metaModelFunction

Metamodel.

setName(name)

Accessor to the object’s name.

Parameters:
namestr

The name of the object.

setOutputSample(sampleY)

Accessor to the output sample.

Parameters:
outputSampleSample

The output sample.

setRelativeErrors(relativeErrors)

Accessor to the relative errors.

Parameters:
relativeErrorssequence of float

The relative errors defined as follows for each output of the model: \displaystyle \frac{\sum_{i=1}^N (y_i - \hat{y_i})^2}{N \Var{\vect{Y}}} with \vect{Y} the vector of the N model’s values y_i and \hat{y_i} the metamodel’s values.

setResiduals(residuals)

Accessor to the residuals.

Parameters:
residualssequence of float

The residual values defined as follows for each output of the model: \displaystyle \frac{\sqrt{\sum_{i=1}^N (y_i - \hat{y_i})^2}}{N} with y_i the N model’s values and \hat{y_i} the metamodel’s values.

setShadowedId(id)

Accessor to the object’s shadowed id.

Parameters:
idint

Internal unique identifier.

setVisibility(visible)

Accessor to the object’s visibility state.

Parameters:
visiblebool

Visibility flag.

Examples using the class

Kriging : multiple input dimensions

Kriging : multiple input dimensions

Kriging : draw the likelihood

Kriging : draw the likelihood

Kriging : cantilever beam model

Kriging : cantilever beam model

Configuring an arbitrary trend in Kriging

Configuring an arbitrary trend in Kriging

Example of multi output Kriging on the fire satellite model

Example of multi output Kriging on the fire satellite model

Kriging the cantilever beam model using HMAT

Kriging the cantilever beam model using HMAT

Kriging : generate trajectories from a metamodel

Kriging : generate trajectories from a metamodel

Choose the trend basis of a kriging metamodel

Choose the trend basis of a kriging metamodel

Kriging with an isotropic covariance function

Kriging with an isotropic covariance function

Kriging: metamodel of the Branin-Hoo function

Kriging: metamodel of the Branin-Hoo function

Kriging : quick-start

Kriging : quick-start

Sequentially adding new points to a kriging

Sequentially adding new points to a kriging

Advanced kriging

Advanced kriging

Kriging :configure the optimization solver

Kriging :configure the optimization solver

Kriging : choose a trend vector space

Kriging : choose a trend vector space